Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (2024)

Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37

Description: hom*o sapiens kinesin family member 15 (KIF15), mRNA. (from RefSeq NM_020242)
Gencode Transcript: ENST00000326047.9_3
Gencode Gene: ENSG00000163808.17_11
Transcript (Including UTRs)
Position:hg19 chr3:44,803,286-44,894,748Size:91,463Total Exon Count:35Strand:+
Coding Region
Position:hg19 chr3:44,803,358-44,894,227Size:90,870Coding Exon Count:35
Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC:2024-04-24 11:59:55

Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (1)Sequence and Links to Tools and Databases

Genomic Sequence (chr3:44,803,286-44,894,748)mRNA (may differ from genome)Protein (1388 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (2)Comments and Description Text from UniProtKB

ID: KIF15_HUMAN
DESCRIPTION: RecName: Full=Kinesin-like protein KIF15; AltName: Full=Kinesin-like protein 2; Short=hKLP2; AltName: Full=Kinesin-like protein 7; AltName: Full=Serologically defined breast cancer antigen NY-BR-62;
FUNCTION: Plus-end directed kinesin-like motor enzyme involved in mitotic spindle assembly (By similarity).
SUBUNIT: Interacts with MKI67 and TPX2.
SUBCELLULAR LOCATION: Cytoplasm. Cytoplasm, cytoskeleton, spindle. Note=Detected during the interphase in the cytoplasm as finely punctuate pattern and irregularly shaped dots. Detected during mitosis on the mitotic spindle. Colocalizes with TPX2 in mitosis. Localizes at the central spindle at anaphase (By similarity). Localizes at the sites of invagin*ting cell membranes, a position that corresponds to the location of the contractile actomyosin ring of dividing cells (By similarity). Colocalizes with actin in interphase (By similarity). Colocalizes in dendrites and in growth cone of axons with microtubules (By similarity).
TISSUE SPECIFICITY: Expressed in testis, colon, thymus and in breast cancer.
SIMILARITY: Belongs to the kinesin-like protein family. KLP2 subfamily.
SIMILARITY: Contains 1 kinesin-motor domain.
SEQUENCE CAUTION: Sequence=AAG48261.1; Type=Frameshift; Positions=Several;

Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (3)Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (4)MalaCards Disease Associations

MalaCards Gene Search: KIF15
Diseases sorted by gene-association score: thrombocytopenia robin sequence* (350), breast cancer (2)
* = Manually curated disease association

Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (5)Comparative Toxicogenomics Database (CTD)

The following chemicals interact with this gene more ... click here to view the complete list

Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (6)Common Gene Haplotype Alleles

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Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (7)RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)

Highest median expression: 9.78 RPKM in Testis
Total median expression: 33.90 RPKM

Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (8)

View in GTEx track of Genome BrowserView at GTEx portalView GTEx Body Map


Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (9)Microarray Expression Data

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Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (10)mRNA Secondary Structure of 3' and 5' UTRs

RegionFold EnergyBasesEnergy/Base
Display As
5' UTR-29.0072-0.403 Picture PostScript Text
3' UTR-122.30521-0.235 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (11)Protein Domain and Structure Information

InterPro Domains: Graphical view of domain structure
IPR024658 - Kinesin-like_KLP2
IPR001752 - Kinesin_motor_dom

Pfam Domains:
PF00225 - Kinesin motor domain
PF15908 - Hyaluronan mediated motility receptor C-terminal
PF16796 - Microtubule binding

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases

ModBase Predicted Comparative 3D Structure on Q9NS87

Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (12)Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (13)Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (14)
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (15)Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (16)Gene Ontology (GO) Annotations with Structured Vocabulary

Molecular Function:
GO:0000166 nucleotide binding
GO:0003677 DNA binding
GO:0003774 motor activity
GO:0003777 microtubule motor activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008017 microtubule binding
GO:0016887 ATPase activity

Biological Process:
GO:0000278 mitotic cell cycle
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER
GO:0007018 microtubule-based movement
GO:0008283 cell proliferation
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II

Cellular Component:
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005819 spindle
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005873 plus-end kinesin complex
GO:0005874 microtubule
GO:0016020 membrane


Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (17)Descriptions from all associated GenBank mRNAs

LF384607 - JP 2014500723-A/192110: Polycomb-Associated Non-Coding RNAs.
AB035898 - hom*o sapiens hklp2 mRNA for kinesin-like protein 2, complete cds.
AK307674 - hom*o sapiens cDNA, FLJ97622.
BC143752 - hom*o sapiens cDNA clone IMAGE:9052266.
BC117174 - hom*o sapiens kinesin family member 15, mRNA (cDNA clone MGC:150783 IMAGE:40125725), complete cds.
MA620184 - JP 2018138019-A/192110: Polycomb-Associated Non-Coding RNAs.
JD536052 - Sequence 517076 from Patent EP1572962.
JD453899 - Sequence 434923 from Patent EP1572962.
LF378949 - JP 2014500723-A/186452: Polycomb-Associated Non-Coding RNAs.
MA614526 - JP 2018138019-A/186452: Polycomb-Associated Non-Coding RNAs.
AL832908 - hom*o sapiens mRNA; cDNA DKFZp762D1914 (from clone DKFZp762D1914).
AK098533 - hom*o sapiens cDNA FLJ25667 fis, clone TST03527, highly similar to hom*o sapiens hklp2 mRNA for kinesin-like protein 2.
LF378954 - JP 2014500723-A/186457: Polycomb-Associated Non-Coding RNAs.
AF308294 - hom*o sapiens serologically defined breast cancer antigen NY-BR-62 mRNA, partial cds.
AK027816 - hom*o sapiens cDNA FLJ14910 fis, clone PLACE1006368, weakly similar to HYALURONAN-MEDIATED MOTILITY RECEPTOR.
LF378959 - JP 2014500723-A/186462: Polycomb-Associated Non-Coding RNAs.
LF378962 - JP 2014500723-A/186465: Polycomb-Associated Non-Coding RNAs.
JD183246 - Sequence 164270 from Patent EP1572962.
JD401004 - Sequence 382028 from Patent EP1572962.
JD438386 - Sequence 419410 from Patent EP1572962.
MA614531 - JP 2018138019-A/186457: Polycomb-Associated Non-Coding RNAs.
MA614536 - JP 2018138019-A/186462: Polycomb-Associated Non-Coding RNAs.
MA614539 - JP 2018138019-A/186465: Polycomb-Associated Non-Coding RNAs.

Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (18)Biochemical and Signaling Pathways

BioCarta from NCI Cancer Genome Anatomy Project
h_ranMSpathway - Role of Ran in mitotic spindle regulation

Reactome (by CSHL, EBI, and GO)

Protein Q9NS87 (Reactome details) participates in the following event(s):

R-HSA-984821 Kinesin-12 is a dimer
R-HSA-983266 Kinesins bind microtubules
R-HSA-6811426 Retrograde COPI vesicles bind kinesin and microtubules
R-HSA-6811423 Retrograde vesicle is tethered at the ER by the NRZ complex and t-SNAREs
R-HSA-983189 Kinesins
R-HSA-983231 Factors involved in megakaryocyte development and platelet production
R-HSA-109582 Hemostasis
R-HSA-2132295 MHC class II antigen presentation
R-HSA-6811434 COPI-dependent Golgi-to-ER retrograde traffic
R-HSA-1280218 Adaptive Immune System
R-HSA-8856688 Golgi-to-ER retrograde transport
R-HSA-168256 Immune System
R-HSA-6811442 Intra-Golgi and retrograde Golgi-to-ER traffic
R-HSA-199991 Membrane Trafficking
R-HSA-5653656 Vesicle-mediated transport


Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (19)Other Names for This Gene

Alternate Gene Symbols: ENST00000326047.1, ENST00000326047.2, ENST00000326047.3, ENST00000326047.4, ENST00000326047.5, ENST00000326047.6, ENST00000326047.7, ENST00000326047.8, KIF15_HUMAN, KLP2, KNSL7, NM_020242, Q17RV9, Q69YL6, Q96JX7, Q9H280, Q9NS87, uc317rzf.1
UCSC ID: ENST00000326047.9_3
RefSeq Accession: NM_020242
Protein: Q9NS87 (aka KIF15_HUMAN)

Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (20)Gene Model Information

Click here for a detailed description of the fields of the table above.

Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (21)Methods, Credits, and Use Restrictions

Click here for details on how this gene model was made and data restrictions if any.
Human Gene KIF15 (ENST00000326047.9_3) from GENCODE V45lift37 (2024)

FAQs

What is the function of kinesin 15? ›

Kinesin family member 15 promotes cancer stem cell phenotype and malignancy via reactive oxygen species imbalance in hepatocellular carcinoma. Identification of KIF15 as a potential therapeutic target and prognostic factor for glioma. KIF15 contributes to cell proliferation and migration in breast cancer.

Is gene transfer possible in humans? ›

Human gene transfer is experimental and is being studied to see whether it could treat certain health problems by compensating for defective genes, producing a potentially therapeutic substance, or triggering the immune system to fight disease.

What genes are unique to humans? ›

However, the specific Notch2NL gene is found only in humans, and is absent from the DNA of chimpanzees, orangutans, and other great apes.

What is the GENCODE? ›

GENCODE is a scientific project in genome research and part of the ENCODE (ENCyclopedia Of DNA Elements) scale-up project. The GENCODE consortium was initially formed as part of the pilot phase of the ENCODE project to identify and map all protein-coding genes within the ENCODE regions (approx. 1% of Human genome).

What happens if kinesin is mutated? ›

Mutations in the KIF21B kinesin gene cause neurodevelopmental disorders through imbalanced canonical motor activity.

Can you carry a gene but not have the disease? ›

These parents are sometimes called "carriers" of the disease because they "carry" the genetic change that causes the disease or condition but do not have the disease themselves. A parent who is a carrier of a disease has a 50% (1 in 2) chance of passing the gene with the genetic change on to each of their children.

What diseases can gene therapy cure? ›

Clinical trials of gene therapy in people have helped treat several diseases and disorders, including:
  • Severe combined immunodeficiency.
  • Hemophilia and other blood disorders.
  • Blindness caused by retinitis pigmentosa.
  • Leukemia.
  • Inherited neurological disorders.
  • Cancer.
  • Heart and blood vessel diseases.
Apr 23, 2024

Can a gene be turned on? ›

The gene regulatory proteins allow the individual genes of an organism to be turned on or off specifically. Different selections of gene regulatory proteins are present in different cell types and thereby direct the patterns of gene expression that give each cell type its unique characteristics.

What is the rarest human genetics? ›

KAT6A syndrome is an extremely rare genetic neurodevelopmental disorder. It can cause a wide range of symptoms with each child affected differently to the other. Common symptoms however include intellectual disability, developmental delays, speech delays and hypotonia.

What is the most unique human trait? ›

High intelligence, cognition, and the capacity for reasoning that the human brain enables are so central to the human condition as to be inseparable from what makes us uniquely human.

Has our DNA been altered? ›

Humans continue to evolve with the emergence of new genes. Researchers have been looking into the evolution of human genetics. They say they have discovered that human genes have continued to change after the evolutionary split from primate ancestors.

How many genes are in GENCODE? ›

General stats
Total No of Genes63086
- unitary pseudogenes258
Immunoglobulin/T-cell receptor gene segments
- protein coding segments411
- pseudogenes237
7 more rows

What is the genetic code of a gene? ›

​Genetic Code

Each gene's code uses the four nucleotide bases of DNA: adenine (A), cytosine (C), guanine (G) and thymine (T) — in various ways to spell out three-letter “codons” that specify which amino acid is needed at each position within a protein.

What is a GTF file? ›

The Gene transfer format (GTF) is a file format used to hold information about gene structure. It is a tab-delimited text format based on the general feature format (GFF), but contains some additional conventions specific to gene information.

What are the roles of kinesin? ›

Kinesins are microtubule-based motor proteins that are well known for their key roles in cell biological processes ranging from cell division, to intracellular transport of mRNAs, proteins, vesicles, and organelles, and microtubule disassembly.

What is the action of kinesin? ›

Kinesins are a large family of motor proteins that move cargoes along microtubules. However, some members of the Kinesin 1 subfamily, including KIF2A, do not function as motor proteins but possess microtubule-destabilization activity (Kornack and Giger, 2005).

What does kinesin 14 do? ›

Kinesin-14 proteins, including Drosophila Non-claret dysjunctional (Ncd), represent an evolutionarily conserved subfamily that function as meiotic/mitotic-specific motors, participating in spindle assembly, spindle pole organization, and chromosome dynamics.

What is the result of kinesin-5 function? ›

Kinesin-5 motors perform essential functions in spindle dynamics by binding to and moving along MTs. Because of their bipolar structure, these motors can crosslink and slide apart anti-parallel spindle MTs (Figure 1 and Figure 2), thus providing the outwardly-directed force that separates the spindle poles.

References

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